Birs- 23w5090: Single-Cell Plus - Data Science Challenges in Single-Cell Research

  1. Title:
    Greater than the sum of the parts: Learning relationships between histone modifications in single cells

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    Probabilistic modelling of single-cell methylation sequencing data reveals regions that are informative of cell type and cell state

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    Modelling gene regulation via integrative analysis of single cell multi-omics data

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    Scalable test of statistical significance for protein-DNA binding changes with insertion and deletion of bases in the genome

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    Discussion Session

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    Modelling of cellular dynamics on differentiation and lineage

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    Joint tensor modeling of single cell 3D genome and epigenetic data with Muscle

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    Combinatorial regulons (cregulon): a novel optimization model for unraveling cellular identity and state transitions through single multi-omics data

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    Day 2: Advances in single-cell RNA-Seq data

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    RUV-III-NB: A robust method for normalization of single cell RNA-seq data

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    Modelling group heteroscedasticity in single-cell RNA-seq pseudo-bulk data

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    One of these cells is not like the other - modelling variability of gene expression in single cell data

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    Robust normalization and integration of single-cell protein expression across CITE-seq datasets

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    Improving the Resolution of Single-Cell TCR-seq

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    Integrative analysis of scRNA-seq, scTCR-seq, and TCR-seq to identify and characterize antigen-specific T cells

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  16. Title:
    scNovel: a neural network framework for novel rare cell detection of single-cell transcriptome data

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    Guided-topic modelling of single-cell transcriptomes enables sub-cell-type and disease-subtype deconvolution of bulk transcriptomes

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    Mosaic single cell data integration

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  19. Title:
    Cell-type-specific co-expression inference from single cell RNA-sequencing data

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  20. Title:
    ClusterDE: a post-clustering differentially expressed (DE) gene identification method robust to false-positive inflation caused by double-dipping

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