Birs- 13w5133: Entanglement in biology; how nature controls the topology of proteins and DNA

  1. Title:
    From Euclidean distance, to polymer uncrossing and knotting, to protein folding rate prediction

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  2. Title:
    Experimental studies on the folding pathways of knotted proteins

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  3. Title:
    Knotting proteins in implicit solvent

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  4. Title:
    Novel knotted structure

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  5. Title:
    New algorithms for sampling closed and/or confined equilateral polygons

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  6. Title:
    The effect of confinement on knotting and geometry of random polygons

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  7. Title:
    Lattice knots and links in tubes

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  8. Title:
    Entanglement in systems of curves with Periodic Boundary Conditions

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  9. Title:
    Entanglements in self-avoiding walks: Old wine in new bottles

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  10. Title:
    Translocating knotted peptides

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  11. Title:
    Mechanically Tightening a Protein Slipknot into a Trefoil Knot

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  12. Title:
    Modelling the kinetoplast DNA network

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  13. Title:
    Random knotting probability of DNA knots and scaling behavior

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  14. Title:
    Modelling the Entropic Pressure near a Ring Polymer

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  15. Title:
    Maxwell-Stefan electrophoresis simulation of equal mass type A catenanes and supercoiled dimers

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  16. Title:
    Sedimentation of macroscopic rigid knots and its relation to gel electrophoretic mobility of DNA knots

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  17. Title:
    Models of chromatin spatial organisation in the cell nucleus

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  18. Title:
    Models that include supercoiling of topological domains reproduce several known features of interphase chromosomes

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  19. Title:
    DNA dynamics during replication: the benefit of entanglement

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  20. Title:
    DNA unlinking by Xer recombination

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