Birs- 14w5103: Particle-Based Stochastic Reaction-Diffusion Models in Biology

  1. Title:
    Diffusion and noise in bistable systems

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  2. Title:
    Mechanics of diffusing surface molecules modulates T-cell receptor sensitivity

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  3. Title:
    Dynamical spatial models of signaling pathways underlying synaptic plasticity

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  4. Title:
    Mesoscopic Stochastic Modeling: Diffusion Operators, Multiphysics Couplings, and Convergence

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  5. Title:
    Multigrid Discretization Strategy on Discrete Stochastic Simulation of Reaction-Diffusion Systems

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  6. Title:
    Scaling properties of exact simulation algorithms for spatially discretized stochastic reaction-diffusion processes

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  7. Title:
    Use of biological model-programs in PySB to explore and calibrate cell-death decisions

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  8. Title:
    Accuracy of the Michaelis-Menten approximation when analyzing effects of molecular noise

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  9. Title:
    Asymptotic and numerical methods for metastable events in stochastic gene networks

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  10. Title:
    Random violence: A stochastic approach to cell cytotoxicity

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  11. Title:
    The Small-Voxel Tracking Algorithm

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  12. Title:
    Reaction rates for mesoscopic reaction-diffusion kinetics

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  13. Title:
    A discrete stochastic model for reversible diffusion-controlled reactions

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  14. Title:
    Dissipative particle dynamics simulations of polymer networks

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  15. Title:
    When we need particle-based reaction-diffusion simulations and when we don’t

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  16. Title:
    The Smoldyn simulator: overview, applications, and hybrid simulation

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  17. Title:
    eGFRD in all dimensions

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  18. Title:
    E-Cell System version 4.0: an integrated platform for single-particle-level

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  19. Title:
    Clonal Heterogeneity vs. Stochastic Cell Fate Decisions in Cancer Response to Targeted Drugs

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  20. Title:
    A dynamic lattice version of the First-Passage Kinetic Monte Carlo method

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