Birs- 15w5167: Rules of Protein-DNA Recognition: Computational and Experimental Advances

  1. Title:
    DNA topology confers sequence specificity to nonspecific architectural proteins

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    DNA recognition and target location by the E. coli Lac Repressor

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    Development of new structural bioinformatics tools to advance our understanding of protein-DNA recognition

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    Target gene specificity in the p53 family of transcription factors

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    Adaptation and Allostery

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    How do transcriptional factors "know" where to go in the genome?

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    The ETS-CRE 16-mer (CCGGAAGTGACGTCAC) on microarrays

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    Nucleotide-resolution structural maps of DNA and DNA-protein complexes, in vitro and in vivo

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    New methods for determining specificity and cooperativity

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    Approaches for Understanding Combinatoric Transcription Factor Interactions

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    Advances in the omega-based B1H system for the comparative analysis of protein-DNA interactions

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  12. Title:
    Explorring variation in Cys2His2 transcription factors

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    Developing and deploying microfluidic tools for understanding transcription factor specificities

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    Computational inference of binding site models from high-throughput SELEX data

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  15. Title:
    Methods for Inferring Transcription Factor Specificity from SELEX-seq Data

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  17. Title:
    Predicting Transcription Factor Binding Sites by Combining Chromatin and Sequence Features

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  18. Title:
    Decoding TF Occupancy and Function

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  19. Title:
    Identifying genetic variants and cellular environments affecting regulation of gene transcription

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  20. Title:
    Genome-wide profiling of chromatin structure and accessibility in D. Melanogaster

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