Birs- 15w5128: Free-Energy Calculations. A Mathematical Perspective

  1. Title:
    Binding free energy, enthalpy and entropy: statistical thermodynamics and computational approaches

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  2. Title:
    Alkali clusters interacting with a helium droplet: Equilibrium shapes from non-equilibrium path-integral free-energy simulations

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    Successes and challenges in calculating binding free energies from molecular simulations

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    Electrostatic free energies in infinite molecular systems: Does conditional convergence matter?

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    Quantifying protein-protein binding energy and entropy using molecular dynamics simulations

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    Sampling of pathways, trajectories, and trajectory fragments to estimate kinetics and free energies

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    Error estimates for the computation of transport coefficients

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  8. Title:
    Free Energies from non-equilibrium simulations: The case of transmembrane ion transport

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    Stratification of Markov processes for rare event simulation

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    Reduced models for computing the dynamics of reaction coordinates

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  11. Title:
    Mathematical framework for exact milestoning

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  12. Title:
    Free energy isn't free: From intuition to computation, and back again

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  13. Title:
    Orthogonal space sampling of hierarchical energy landscapes for free energy calculations

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    Generalized-ensemble algorithms for calculations of ligand affinity

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  15. Title:
    Quasiequilibrium methods applied to the convergence analysis and improvement of metadynamics

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  16. Title:
    Transition-based reweighting analysis method

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  17. Title:
    Mathematical aspects of adaptive samplers: application to free energy calculation

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  18. Title:
    Analysis of discrete space versions of the self-healing umbrella sampling and well-tempered metadynamics algorithms

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  19. Title:
    Reduced variance Monte Carlo for doubly intractable problems exploiting multi-core architectures

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  20. Title:
    Enhanced sampling using extended stochastic dynamics

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