Birs- 22w5186: Mathematics and Statistics of Genomic Epidemiology
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Title: SARS-CoV-2, an evolving pandemic
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Title: Crhonic infections likely drive SARS-CoV-2 adaptation
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Title: Comparing the evolutionary dynamics of predominant SARS-Cov-2 virus lineages co-circulating in Mexico
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Title: Designing optimal sampling strategies for pathogen genomic surveillance using reinforcement
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Title: Genome-wide association of convergent mutations with SARS-CoV-2 animal host preference
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Title: Epidemiological inference virus lineages using segregating sites
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Title: Deep learning to predict the biosynthetic gene clusters in bacterial genomes
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Title: PCA outperforms popular hidden variable inference methods for QTL mapping
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Title: Multi-trait analysis of rare-variant association summary statistics using MTAR
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Title: Likelihood-based Mendelian randomization analysis with automated instrument selection and horizontal pleiotropic modeling
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Title: Detecting imported cases within a geographically limited genomic sample of an infectious disease
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Title: Two kinds of over-dispersion affect regional DNA methylation patterns
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Title: Beyond consensus sequence - a quantitative scheme for inferring transmission using deep sequencing in a bacterial transmission model
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Title: Are HIV genetic clusters enriched with transmitters?
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Title: Deep learning from phylogenies to uncover the epidemiological dynamics of outbreaks
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Title: Assumptions and Identifiability of Phylodynamic Inference
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Title: Investigating the limits of detection of AMR in agri-food metagenomic samples
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Title: Compiling all publicly available genotype-phenotype data on AMR
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Title: Bigger is better? Solving problems while working with hundreds of thousands of bacterial genomes
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Title: Accurate and interpretable prediction of drug resistance in M. tuberculosis using deep learning
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